原有的部署脚本年久失修, 所以花了点时间修复下:
- pipeline: surpi https://github.com/ferstar/surpi
- what I have done: https://github.com/ferstar/surpi/commit/af6c8a830cb55444e82d973946c74548bef89c0f
- addition
- SRA Toolkit http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software
- aspera connect A small test by using ascp
ascp -T -i /home/ferstar/.aspera/connect/etc/asperaweb_id_dsa.openssh --host ftp-private.ncbi.nlm.nih.gov --user anonftp --mode recv /1GB ./
1GB 100% 1025MB 6.9Mb/s 08:18
Completed: 1049600K bytes transferred in 499 seconds
(17226K bits/sec), in 1 file.
much more faster than traditional download tools such as curl and wget